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111 lines
4.8 KiB
VimL
111 lines
4.8 KiB
VimL
" Vim syntax file
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" Language: AceDB model files
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" Maintainer: Stewart Morris (Stewart.Morris@ed.ac.uk)
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" Last change: Thu Apr 26 10:38:01 BST 2001
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" URL: http://www.ed.ac.uk/~swmorris/vim/acedb.vim
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" Syntax file to handle all $ACEDB/wspec/*.wrm files, primarily models.wrm
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" AceDB software is available from http://www.acedb.org
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" quit when a syntax file was already loaded
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if exists("b:current_syntax")
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finish
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endif
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syn keyword acedbXref XREF
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syn keyword acedbModifier UNIQUE REPEAT
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syn case ignore
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syn keyword acedbModifier Constraints
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syn keyword acedbType DateType Int Text Float
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" Magic tags from: http://genome.cornell.edu/acedocs/magic/summary.html
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syn keyword acedbMagic pick_me_to_call No_cache Non_graphic Title
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syn keyword acedbMagic Flipped Centre Extent View Default_view
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syn keyword acedbMagic From_map Minimal_view Main_Marker Map Includes
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syn keyword acedbMagic Mapping_data More_data Position Ends Left Right
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syn keyword acedbMagic Multi_Position Multi_Ends With Error Relative
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syn keyword acedbMagic Min Anchor Gmap Grid_map Grid Submenus Cambridge
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syn keyword acedbMagic No_buttons Columns Colour Surround_colour Tag
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syn keyword acedbMagic Scale_unit Cursor Cursor_on Cursor_unit
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syn keyword acedbMagic Locator Magnification Projection_lines_on
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syn keyword acedbMagic Marker_points Marker_intervals Contigs
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syn keyword acedbMagic Physical_genes Two_point Multi_point Likelihood
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syn keyword acedbMagic Point_query Point_yellow Point_width
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syn keyword acedbMagic Point_pne Point_pe Point_nne Point_ne
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syn keyword acedbMagic Derived_tags DT_query DT_width DT_no_duplicates
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syn keyword acedbMagic RH_data RH_query RH_spacing RH_show_all
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syn keyword acedbMagic Names_on Width Symbol Colours Pne Pe Nne pMap
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syn keyword acedbMagic Sequence Gridded FingerPrint In_Situ Cosmid_grid
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syn keyword acedbMagic Layout Lines_at Space_at No_stagger A1_labelling
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syn keyword acedbMagic DNA Structure From Source Source_Exons
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syn keyword acedbMagic Coding CDS Transcript Assembly_tags Allele
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syn keyword acedbMagic Display Colour Frame_sensitive Strand_sensitive
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syn keyword acedbMagic Score_bounds Percent Bumpable Width Symbol
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syn keyword acedbMagic Blixem_N Address E_mail Paper Reference Title
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syn keyword acedbMagic Point_1 Point_2 Calculation Full One_recombinant
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syn keyword acedbMagic Tested Selected_trans Backcross Back_one
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syn keyword acedbMagic Dom_semi Dom_let Direct Complex_mixed Calc
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syn keyword acedbMagic Calc_upper_conf Item_1 Item_2 Results A_non_B
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syn keyword acedbMagic Score Score_by_offset Score_by_width
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syn keyword acedbMagic Right_priority Blastn Blixem Blixem_X
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syn keyword acedbMagic Journal Year Volume Page Author
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syn keyword acedbMagic Selected One_all Recs_all One_let
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syn keyword acedbMagic Sex_full Sex_one Sex_cis Dom_one Dom_selected
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syn keyword acedbMagic Calc_distance Calc_lower_conf Canon_for_cosmid
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syn keyword acedbMagic Reversed_physical Points Positive Negative
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syn keyword acedbMagic Point_error_scale Point_segregate_ordered
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syn keyword acedbMagic Point_symbol Interval_JTM Interval_RD
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syn keyword acedbMagic EMBL_feature Homol Feature
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syn keyword acedbMagic DT_tag Spacer Spacer_colour Spacer_width
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syn keyword acedbMagic RH_positive RH_negative RH_contradictory Query
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syn keyword acedbMagic Clone Y_remark PCR_remark Hybridizes_to
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syn keyword acedbMagic Row Virtual_row Mixed In_pool Subpool B_non_A
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syn keyword acedbMagic Interval_SRK Point_show_marginal Subsequence
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syn keyword acedbMagic Visible Properties Transposon
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syn match acedbClass "^?\w\+\|^#\w\+"
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syn match acedbComment "//.*"
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syn region acedbComment start="/\*" end="\*/"
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syn match acedbComment "^#\W.*"
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syn match acedbHelp "^\*\*\w\+$"
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syn match acedbTag "[^^]?\w\+\|[^^]#\w\+"
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syn match acedbBlock "//#.\+#$"
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syn match acedbOption "^_[DVH]\S\+"
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syn match acedbFlag "\s\+-\h\+"
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syn match acedbSubclass "^Class"
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syn match acedbSubtag "^Visible\|^Is_a_subclass_of\|^Filter\|^Hidden"
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syn match acedbNumber "\<\d\+\>"
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syn match acedbNumber "\<\d\+\.\d\+\>"
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syn match acedbHyb "\<Positive_\w\+\>\|\<Negative\w\+\>"
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syn region acedbString start=/"/ end=/"/ skip=/\\"/ oneline
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" Rest of syntax highlighting rules start here
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" Define the default highlighting.
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" Only when an item doesn't have highlighting yet
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hi def link acedbMagic Special
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hi def link acedbHyb Special
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hi def link acedbType Type
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hi def link acedbOption Type
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hi def link acedbSubclass Type
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hi def link acedbSubtag Include
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hi def link acedbFlag Include
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hi def link acedbTag Include
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hi def link acedbClass Todo
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hi def link acedbHelp Todo
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hi def link acedbXref Identifier
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hi def link acedbModifier Label
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hi def link acedbComment Comment
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hi def link acedbBlock ModeMsg
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hi def link acedbNumber Number
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hi def link acedbString String
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let b:current_syntax = "acedb"
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" The structure of the model.wrm file is sensitive to mixed tab and space
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" indentation and assumes tabs are 8 so...
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se ts=8
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